PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_13480V3.2.p
Common NameHAP3E
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YB
Protein Properties Length: 164aa    MW: 17903.9 Da    PI: 6.9579
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_13480V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB130.74.9e-4132111192
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdrflPian+srimkk+lPanaki+kdaketvq            easdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre
  Pp3c3_13480V3.2.p  32 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQ------------EASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 111
                        69********************************98............69*****************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.3E-3928126IPR009072Histone-fold
SuperFamilySSF471131.26E-3035131IPR009072Histone-fold
PfamPF008083.5E-93869IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-127391No hitNo description
PRINTSPR006154.8E-1292110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAEAGSPGSQ DSPHSDEYGG NHGGGDRDNS SVREQDRFLP IANISRIMKK ALPANAKIAK  60
DAKETVQEAS DKCQREKRKT INGDDLLWAM STLGFEDYVE PLKVYLHKYR EGALTNKAGE  120
SSSGKKEGSN IVSPGVQMVQ QGGYNPYMQA QMMTSGNYQV QHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-3631111193NF-YB
4awl_B4e-3631111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-3631111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B4e-3632111192Transcription factor HapC (Eurofung)
4g92_B4e-3632111192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.109072e-62protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0198982e-83EU019898.1 Physcomitrella patens CCAAT-box binding factor HAP3-like protein (HAP3E) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001756878.14e-76predicted protein
SwissprotO233103e-52NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0I9QPW31e-115A0A0I9QPW3_PHYPA; CCAAT-box binding factor HAP3-like protein
STRINGPP1S25_10V6.11e-112(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-53nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Xie Z, et al.
    Duplication and functional diversification of HAP3 genes leading to the origin of the seed-developmental regulatory gene, LEAFY COTYLEDON1 (LEC1), in nonseed plant genomes.
    Mol. Biol. Evol., 2008. 25(8): p. 1581-92
    [PMID:18453547]